Title: Ginsburg - Job Examples  
Owner: George Garrett
Creator: George Garrett Mar 06, 2021
Last Changed by: Edward Ferguson Aug 26, 2024
Tiny Link: (useful for email) https://columbiauniversity.atlassian.net/wiki/x/tzW0Aw
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Research Computing Services (1)
    Page: Ginsburg HPC Cluster User Documentation
Hierarchy
Children (1)
    Page: Running MRtrix in a Singularity container
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Time Editor  
Aug 26, 2024 19:59 Edward Ferguson View Changes
Aug 26, 2024 19:58 Edward Ferguson View Changes
Jul 13, 2024 00:52 Al Tucker View Changes
Confluence upgrade somehow blew the line spacing in the PuTTY jupyter instructions all to hell. Fixed that.
Jul 11, 2024 14:08 Robert Kudyba View Changes
Jul 11, 2024 13:56 Robert Kudyba  
Outgoing Links
External Links (54)
    https://www.xquartz.org/
    https://cloud.sylabs.io/library
    https://www.sylabs.io/guides/2.6/user-guide/appendix.html#p…
    https://www.gnu.org/software/bash/manual/html_node/Bash-Bui…
    https://www.mathworks.com/help/releases/R2020b/parallel-com…
    https://www.mathworks.com/matlabcentral/answers/217639-what…
    https://hub.docker.com/u/jcmaes
    https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MA…
    https://github.com/cvanaret/Uno/tree/main/examples
    mailto:couenne@list.coin-or.org
    weatherby.genetics.utah.edu/data/maker_tutorial.tgz
    https://www.mathworks.com/help/releases/R2020b/parallel-com…
    docs.nvidia.com/cuda/cuda-samples/#samples-reference
    https://cbrackley.github.io/simple_lammps_tutorial/
    https://groups.google.com/g/maker-devel/c/9Aw7CS5oep0
    https://hub.docker.com/r/coinor/coin-or-optimization-suite
    https://github.com/google/jax
    https://stackoverflow.com/a/53759961
    https://biocontainers.pro/tools/maker
    https://slurm.schedmd.com/sbatch.html#OPT_ntasks
    https://sylabs.io/docs/#doc-singularity-3.7
    https://www.sylabs.io/guides/2.6/user-guide/index.html
    https://raw.githubusercontent.com/broadinstitute/gatk/maste…
    https://mobaxterm.mobatek.net/download-home-edition.html
    https://github.com/google/jax#instructions
    https://github.com/GeoChemFoam/GeoChemFoam/wiki/Test-Case-0…
    https://lsdyna.ansys.com/
    https://stackoverflow.com/a/73828155/7606730
    https://columbiauniversity.atlassian.net/wiki/display/rcs/G…
    https://www.sylabs.io/guides/2.6/user-guide/appendix.html#s…
    https://github.com/acolite/acolite
    https://github.com/coin-or/Couenne
    https://goteleport.com/blog/x11-forwarding/
    https://linuxize.com/post/how-to-use-nano-text-editor/
    https://www.sylabs.io/guides/2.6/user-guide/appendix.html#e…
    https://hub.docker.com/
    https://docs.anaconda.com/anaconda/user-guide/tasks/tensorf…
    https://www.mathworks.com/help/releases/R2020b/parallel-com…
    https://www.julienmaes.com/geochemfoam
    https://www.mathworks.com/academia/tah-portal/columbia-univ…
    docs.nvidia.com/cuda/cuda-compiler-driver-nvcc/
    https://julialang.org/packages/
    https://docs.sylabs.io/guides/3.7/user-guide/environment_an…
    https://catalog.ngc.nvidia.com/orgs/hpc/containers/lammps
    https://www.sylabs.io/singularity/
    https://www.htslib.org/
    https://columbiauniversity.atlassian.net/wiki/display/rcs/G…
    https://www.tensorflow.org/install/docker
    hs015.nl
    www.coin-or.org/Couenne
    https://gatk.broadinstitute.org/hc/en-us/articles/360041320…
    https://github.com/GeoChemFoam
    https://depot.galaxyproject.org/singularity/maker:3.01.03--…
    https://slurm.schedmd.com/faq.html#terminal
Research Computing Services (5)     Page: Habanero - Job Examples
    Page: R Examples
    Page: Matlab Examples
    Page: Ginsburg - Job Examples
    Page: Job Examples