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The sjupyter command is meant to quickly run a jupyter notebook using the default anaconda environment with one command. For more complicated usage in batch files and such running the command directly from an interactive session or batch file is a better approach.requires that you activate your conda environment before use if you intend to use libraries within a conda environment. It also requires that you have Jupyter Notebook 5.7 or greater installed within your Conda environment. You can ensure that this is the case by running the following command after your conda environment is activated:
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Axon has a command (sjupyter) that will start up a Jupyter notebook server automatically and give you the URL to connect. To use this command, first connect to the login node (e.g. ssh axon.rc.zi.columbia.edu), then navigate to the directory you want to start your notebook in, and finally run sjupyter. For instance, if you wanted to run a Jupyter notebook within a directory named my-great-analysis that existed within your home directory, you might run the following commands:
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