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The Fitzpatrick Lab currently has 5 workstations that are managed by Zuckerman Institute Research Computing. 4 of these workstations were built by Single Particle while 1 was built by Exxact. The following table summarizes the hardware specifications for these workstations:
| Hostname | Vendor | CPU | Logical Cores | CPU Clock Speed (GHz) | GPU Model | Number of GPUs | Operating System |
|---|---|---|---|---|---|---|---|
| exxgpu1.fitzpatrick | Exxact | Intel(R) Core(TM) i7-8700 CPU | 12 | 3.2 | NVIDIA GeForce 1060 | 1 | CentOS 7 |
| spgpu3.fitzpatrick | Single Particle | Xeon(R) Silver 4116 | 48 | 2.1 | GeForce RTX 2080 Ti | 1 | CentOS 7 |
| spgpu2.fitzpatrick | Single Particle | Xeon(R) Silver 4116 | 48 | 2.1 | GeForce RTX 2080 Ti | 1 | CentOS 7 |
| spgpu1.fitzpatrick | Single Particle | Xeon(R) Silver 4116 | 48 | 2.1 | GeForce RTX 2080 Ti | 1 | CentOS 7 |
| spgpu4.fitzpatrick | Single Particle | Xeon(R) Silver 4116 | 48 | 2.1 | GeForce RTX 2080 Ti | 1 | CentOS 7 |
Software Installed
Each of the Linux workstations listed above has the following software installed:
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If you wanted to use IMOD v. 4.10.46, you can run the following commandset of commands, which will automatically first unload SBGrid (since it has conflicts with IMOD v. 4.10.46) and then load IMOD:
| Code Block |
|---|
module unload sbgrid
module load imod |
To go back to using SBGrid programs, we can then type the following, which will unload imod and load sbgrid:
| Code Block |
|---|
module unload imod
module load sbgrid |
If you do not unload conflicting module, SBGrid will tell you which modules you need to first unload:
| Code Block |
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[zrcadmin@spgpu3 ~]$ module load imod
Lmod has detected the following error: Cannot load module "imod" because these module(s) are loaded:
sbgrid
While processing the following module(s):
Module fullname Module Filename
--------------- ---------------
imod /opt/lmod/modulefiles/Linux/imod.lua |
Application-Specific Notes
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